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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39536631_39537024_F

Intron Information:

Intron Rank:
142794
Intron Class:
major
Intron Phase:
Intron Coordinates:
39536631 - 39537024
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAATGAG
5'SS Class:
major
3'SS Sequence:
TGCTTTTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTGCTTTTATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.3
65.6
40.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
77
0.61
0.9
73.6
36
Minor 5ss
26.8
-2.7
3
31.5
42.8
Minor BPS
57.6
0.09
1.8
66.64
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026994
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023895
39535547 - 39538024
2478
ENSAPLT00000020691
39534714 - 39538184
3471