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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39554181_39564097_R

Intron Information:

Intron Rank:
145284
Intron Class:
major
Intron Phase:
Intron Coordinates:
39554181 - 39564097
Intron Length:
9917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTG
5'SS Class:
strong_major
3'SS Sequence:
TCACCATATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ATATTCTCACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.9
36.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
68.8
0.42
1
62.5
37.5
Minor 5ss
40.9
-1
3.2
55.7
48.5
Minor BPS
51.7
0.13
1.8
71
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025564
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017311
39553079 - 39564255
11177