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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39564237_39594347_R

Intron Information:

Intron Rank:
145285
Intron Class:
major
Intron Phase:
Intron Coordinates:
39564237 - 39594347
Intron Length:
30111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCTTTCTGAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.3
37.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
83.7
0.76
0.9
84.6
30.3
Minor 5ss
32
-2.1
3.3
42.6
44.4
Minor BPS
69.5
0.61
1.4
75.52
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025564
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034348
39564017 - 39594439
30423