Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39593283_39597230_F

Intron Information:

Intron Rank:

134902

Intron Class:

major

Intron Phase:

Intron Coordinates:

39593283 - 39597230

Intron Length:

3948

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAATA

5'SS Class:

strong_major

3'SS Sequence:

TGTCTATCTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTATAT

U12 Branch Point Sequence:

TTGTGTCTATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.1

1.04

0.7

89.9

22.1

Major BPS

64.1

0.35

1.2

45.5

Major PPT

68.5

0.42

1.1

Minor 5ss

37.1

-1.5

48.8

46.9

Minor BPS

46.7

-0.1

2.3

72.03

45.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022567

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047294

39592614 - 39597605

4992