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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39602182_39615049_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39602182 - 39615049
Intron Length:
12868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGGGTGCT
5'SS Class:
major
3'SS Sequence:
ACTTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTCTTTACTT
Flanking Amino Acid:
VWDGFSNSLFGIVSIMTLTV
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
66.2
39.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
86.3
0.82
0.7
80.4
31
Minor 5ss
29
-2.4
3.4
41.3
45.2
Minor BPS
75.9
0.89
1.5
91.31
32.6

Associated Gene:

Gene:
OPN3
Ensembl Gene ID:
ENSAPLG00000014871
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015489
39601830 - 39621885
20056