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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39616653_39621621_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39616653 - 39621621
Intron Length:
4969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCTCTTACA
Flanking Amino Acid:
PVIYIFMSRKFRQCLLQLLC
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
93
0.97
0.6
88.1
21.9
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
61.9
0.37
1.9
80.2
35.2

Associated Gene:

Gene:
OPN3
Ensembl Gene ID:
ENSAPLG00000014871
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015489
39601830 - 39621885
20056