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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39709778_39710797_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39709778 - 39710797
Intron Length:
1020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCGA
5'SS Class:
strong_major
3'SS Sequence:
TTACCTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTACCTTTTACA
Flanking Amino Acid:
GAAGVTLARQHNKSRSNLWD
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.7
41.7
Major BPS
74.2
0.6
1
67
39.4
Major PPT
85.2
0.79
0.8
79.8
31.9
Minor 5ss
24.7
-2.9
3
29.8
43.1
Minor BPS
63.8
0.43
1.6
73.71
37.4

Associated Gene:

Gene:
RGS7
Ensembl Gene ID:
ENSAPLG00000014655
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033793
39709682 - 39942760
233079
ENSAPLT00000015310
39709682 - 39942760
233079