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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39856209_39880552_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39856209 - 39880552
Intron Length:
24344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTCCTTCAAAC
Flanking Amino Acid:
LTKNLSIEDPVEALHLGTLM
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.5
0.44
0.9
65.7
33.8
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
54.9
0.13
1.7
65.4
40

Associated Gene:

Gene:
RGS7
Ensembl Gene ID:
ENSAPLG00000014655
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046466
39794879 - 39942760
147882
ENSAPLT00000033793
39709682 - 39942760
233079
ENSAPLT00000015310
39709682 - 39942760
233079