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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39891407_39904785_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39891407 - 39904785
Intron Length:
13379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTCAGTGTG
5'SS Class:
major
3'SS Sequence:
TATTCTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
AATTCTGTACCA
Flanking Amino Acid:
NCWEPENTDYAVYLCKRTMQ
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.3
68.8
42.2
Major BPS
75.1
0.62
1
65.6
41
Major PPT
83.6
0.76
0.9
81
36.2
Minor 5ss
31.9
-2.1
3.2
38
41
Minor BPS
49.1
-0
2.2
66.46
40.2

Associated Gene:

Gene:
RGS7
Ensembl Gene ID:
ENSAPLG00000014655
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015310
39709682 - 39942760
233079
ENSAPLT00000046466
39794879 - 39942760
147882
ENSAPLT00000033793
39709682 - 39942760
233079