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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39904851_39906694_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39904851 - 39906694
Intron Length:
1844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
GATGTATTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
ACAACCTAACCT
Flanking Amino Acid:
ARLELADYEAESLARLQRAF
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
72.2
37.5
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
73.9
0.54
1
65.6
44.3
Minor 5ss
39.9
-1.1
2.8
57.3
39.7
Minor BPS
47.8
-0
2
63.74
46.2

Associated Gene:

Gene:
RGS7
Ensembl Gene ID:
ENSAPLG00000014655
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046466
39794879 - 39942760
147882
ENSAPLT00000033793
39709682 - 39942760
233079
ENSAPLT00000015310
39709682 - 39942760
233079