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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39906772_39906914_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39906772 - 39906914
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
ATAACATTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAT
Flanking Amino Acid:
FIFMQAEAQAKVDKKRDKIE
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
29.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
60.9
0.25
1.1
54.6
44.1
Minor 5ss
43.2
-0.7
2.7
54.4
36.6
Minor BPS
72
0.77
1.3
86.29
32.9

Associated Gene:

Gene:
RGS7
Ensembl Gene ID:
ENSAPLG00000014655
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046466
39794879 - 39942760
147882
ENSAPLT00000033793
39709682 - 39942760
233079
ENSAPLT00000015310
39709682 - 39942760
233079