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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39925746_39926528_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39925746 - 39926528
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGCAAA
5'SS Class:
major
3'SS Sequence:
TCCTTTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTACTCATAACA
Flanking Amino Acid:
PPTEDELHQEIKHWQMQLDR
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
68
38.6
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
84.3
0.77
0.7
80.5
24.8
Minor 5ss
41.1
-1
2.5
48.9
47
Minor BPS
63.4
0.42
1.6
74.79
35.8

Associated Gene:

Gene:
RGS7
Ensembl Gene ID:
ENSAPLG00000014655
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015310
39709682 - 39942760
233079
ENSAPLT00000046466
39794879 - 39942760
147882
ENSAPLT00000033793
39709682 - 39942760
233079