About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39928220_39928704_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39928220 - 39928704
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTCCCCTATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCCGAT
U12 Branch Point Sequence:
GTTCCCCTATTA
Flanking Amino Acid:
DDTTFWELEASKEPGQQRVK
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
82.1
30.5
Major BPS
50.9
0.02
1.4
52.1
45.2
Major PPT
69
0.43
0.9
67.6
33.7
Minor 5ss
42.8
-0.8
2.7
59.2
45.4
Minor BPS
49.9
-0
1.9
66.69
39.5

Associated Gene:

Gene:
RGS7
Ensembl Gene ID:
ENSAPLG00000014655
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046466
39794879 - 39942760
147882
ENSAPLT00000033793
39709682 - 39942760
233079
ENSAPLT00000015310
39709682 - 39942760
233079