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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39928831_39936835_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39928831 - 39936835
Intron Length:
8005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGAG
5'SS Class:
strong_major
3'SS Sequence:
TATTGTACCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TATATTGTACCA
Flanking Amino Acid:
LESEFSSENLRFWLAVEDLK
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
74.7
35.6
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
68.8
0.42
0.9
62.9
38.1
Minor 5ss
31.4
-2.1
3.2
39.6
46.4
Minor BPS
45
-0.3
2.2
60.18
40.2

Associated Gene:

Gene:
RGS7
Ensembl Gene ID:
ENSAPLG00000014655
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015310
39709682 - 39942760
233079
ENSAPLT00000046466
39794879 - 39942760
147882
ENSAPLT00000033793
39709682 - 39942760
233079