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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_40036609_40038034_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40036609 - 40038034
Intron Length:
1426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TATTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTATTT
Flanking Amino Acid:
NIRPKHDSGIKAKISMKI*
Intron Amino Acid Position:
1567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.5
0.84
0.8
85.1
34.8
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
57.4
0.31
1.8
77.92
38.5

Associated Gene:

Gene:
FMN2
Ensembl Gene ID:
ENSAPLG00000014536
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015152
40036582 - 40194316
157735