About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_40038117_40054254_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40038117 - 40054254
Intron Length:
16138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATTTG
5'SS Class:
major
3'SS Sequence:
TGTCTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATATTTATAATT
Flanking Amino Acid:
KKENKLILQERVKEAEEVCR
Intron Amino Acid Position:
1539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
72.3
40
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
81.3
0.7
0.8
78.1
34.9
Minor 5ss
42.1
-0.9
3.2
57.9
46.7
Minor BPS
59.8
0.39
1.5
75.58
35.1

Associated Gene:

Gene:
FMN2
Ensembl Gene ID:
ENSAPLG00000014536
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015152
40036582 - 40194316
157735