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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_40084507_40094677_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40084507 - 40094677
Intron Length:
10171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGAAT
5'SS Class:
major
3'SS Sequence:
ATTTCAATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTTATTTCAATT
Flanking Amino Acid:
DLRKMKKDLRVCETEAAKVY
Intron Amino Acid Position:
1441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
71.7
39.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
79.4
0.66
0.9
75.6
37.7
Minor 5ss
32.9
-1.9
3.4
48.5
47.3
Minor BPS
56.8
0.29
1.5
73.18
38

Associated Gene:

Gene:
FMN2
Ensembl Gene ID:
ENSAPLG00000014536
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015152
40036582 - 40194316
157735