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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_40098222_40107881_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40098222 - 40107881
Intron Length:
9660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CACTTCTTAATT
Flanking Amino Acid:
LETLQALYENRAQSDELEKI
Intron Amino Acid Position:
1256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
85.1
25.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
88.4
0.86
0.7
81.4
35
Minor 5ss
34.4
-1.8
2.9
46.9
41.8
Minor BPS
71.3
0.75
1.2
76.1
41.2

Associated Gene:

Gene:
FMN2
Ensembl Gene ID:
ENSAPLG00000014536
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015152
40036582 - 40194316
157735