Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_40107944_40129146_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40107944 - 40129146

Intron Length:

21203

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTATAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATCAT

U12 Branch Point Sequence:

TTTTTTTTTATA

Flanking Amino Acid:

LHLDMRDIQHAVVNLDNSVV

Intron Amino Acid Position:

1235

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.8

79.4

28.8

Major BPS

88.2

0.95

0.9

88.3

28.5

Major PPT

94.7

1.01

0.5

91.9

19.2

Minor 5ss

32.1

-2

3.1

36.8

41.9

Minor BPS

66.5

0.51

1.5

77.98

32.4

Associated Gene:

Gene:

FMN2

Ensembl Gene ID:

ENSAPLG00000014536

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015152

40036582 - 40194316

157735