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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_40140537_40141658_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40140537 - 40141658
Intron Length:
1122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTAACTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
TTTTGCTTAACT
Flanking Amino Acid:
YWTRIQLHSKRDSSASLVWE
Intron Amino Acid Position:
1170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.4
23.9
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
70.8
0.47
0.9
67.9
37.9
Minor 5ss
41.2
-1
3
57.8
46.8
Minor BPS
84.1
1.15
1.6
100
28.8

Associated Gene:

Gene:
FMN2
Ensembl Gene ID:
ENSAPLG00000014536
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015152
40036582 - 40194316
157735