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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_40157758_40162849_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40157758 - 40162849
Intron Length:
5092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTCT
5'SS Class:
major
3'SS Sequence:
TTTTCAGATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTTTTTCAGA
Flanking Amino Acid:
EEQGLKITETELKSTILETE
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.5
33
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
77.1
0.61
1
74.7
39.3
Minor 5ss
48.3
-0.2
2.6
68.1
42.9
Minor BPS
55.6
0.17
2
73.92
38.7

Associated Gene:

Gene:
FMN2
Ensembl Gene ID:
ENSAPLG00000014536
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015152
40036582 - 40194316
157735