Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_40211454_40212747_R

Intron Information:

Intron Rank:

135073

Intron Class:

minor

Intron Phase:

Intron Coordinates:

40211454 - 40212747

Intron Length:

1294

Sequence Information:

Terminal Dinucleotides:

AT-AC

5'SS Sequence:

TGC|ATATCCTTG

5'SS Class:

strong_minor

3'SS Sequence:

TAATGTACTATAC|A

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

CCTTAAT

U12 Branch Point Sequence:

TGCTCCTTAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

27.5

-1.4

3.3

Major BPS

74.6

0.61

1.1

75.5

35.1

Major PPT

38.7

-0.6

3.1

51.7

42.3

Minor 5ss

83.9

1.13

1.4

75.8

40.3

Minor BPS

76.3

0.69

1.3

71.98

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020043

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023342

40210586 - 40218651

8066