Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_40217385_40218483_R

Intron Information:

Intron Rank:

135075

Intron Class:

major

Intron Phase:

Intron Coordinates:

40217385 - 40218483

Intron Length:

1099

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGGTGA

5'SS Class:

strong_major

3'SS Sequence:

TAAACCACTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTTTTTTAAAC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

68.4

39.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

64.5

0.33

55.6

39.4

Minor 5ss

42.2

-0.9

3.1

55.7

48.5

Minor BPS

76.4

0.81

1.2

82.98

29.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020043

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023342

40210586 - 40218651

8066