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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_40230416_40230797_R

Intron Information:

Intron Rank:
145629
Intron Class:
major
Intron Phase:
Intron Coordinates:
40230416 - 40230797
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACAAAT
U12 Branch Point Sequence:
AAAAGCACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.4
36.4
Major BPS
57.1
0.18
1
62.9
30.6
Major PPT
89.1
0.88
0.6
88
22.1
Minor 5ss
43.4
-0.7
2.8
56.4
47.7
Minor BPS
38.6
-0.7
2
52.68
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025728
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043834
40229498 - 40231088
1591