Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_40434820_40434871_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

40434820 - 40434871

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAAGTCT

5'SS Class:

major

3'SS Sequence:

AAAGCCTGGTTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AAATAAA

U12 Branch Point Sequence:

AATTCGACAAAT

Flanking Amino Acid:

LLISKRRKEKGTMQNSMNTR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.6

0.39

1.3

66.4

39.9

Major BPS

0.3

62.3

30.4

Major PPT

48.5

-0

1.1

42.4

Minor 5ss

34.1

-1.8

3.3

48.5

47.2

Minor BPS

43.2

-0.4

2.4

66.78

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019479

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024000

40434544 - 40435546

1003