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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_40436591_40440592_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
40436591 - 40440592
Intron Length:
4002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
84.6
0.86
1
74
41.2
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
CHRM3
Ensembl Gene ID:
ENSAPLG00000014510
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015118
40242988 - 40440677
197690