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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_40539630_40571690_F

Intron Information:

Intron Rank:
124987
Intron Class:
major
Intron Phase:
Intron Coordinates:
40539630 - 40571690
Intron Length:
32061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTTGTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83
0.74
0.9
80.4
36.6
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
62.8
0.38
2
74.79
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017303
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020155
40539424 - 40684242
144819