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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_40571834_40573365_F

Intron Information:

Intron Rank:
124988
Intron Class:
major
Intron Phase:
Intron Coordinates:
40571834 - 40573365
Intron Length:
1532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCACTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
76.6
32.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.4
0.75
0.7
79.2
27.9
Minor 5ss
35.8
-1.6
3.4
45.8
44.7
Minor BPS
66.1
0.59
1.7
82.56
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017303
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020155
40539424 - 40684242
144819