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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_40643806_40645881_F

Intron Information:

Intron Rank:
124990
Intron Class:
major
Intron Phase:
Intron Coordinates:
40643806 - 40645881
Intron Length:
2076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTATTTCTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
31.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
84
0.76
0.8
78.6
28.6
Minor 5ss
50.1
0.01
2.4
63.4
43.4
Minor BPS
50.4
0.09
2
76.75
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017303
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033516
40643466 - 40648916
5451