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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_40643806_40663392_F

Intron Information:

Intron Rank:
124992
Intron Class:
major
Intron Phase:
Intron Coordinates:
40643806 - 40663392
Intron Length:
19587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
GGTACATGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
31.3
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
92
0.95
0.6
87.6
22.8
Minor 5ss
50.1
0.01
2.4
63.4
43.4
Minor BPS
54.4
0.22
1.8
73.44
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017303
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035134
40643466 - 40664791
21326