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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_40646002_40647759_F

Intron Information:

Intron Rank:
124991
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
40646002 - 40647759
Intron Length:
1758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGAAA
5'SS Class:
major
3'SS Sequence:
CAACCCTGACAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
TCCTCCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
69.9
35.7
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
47.6
-0.1
1.1
42
36.9
Minor 5ss
37
-1.5
3.2
47.6
48.1
Minor BPS
66.7
0.61
1.8
79.08
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017303
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033516
40643466 - 40648916
5451