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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_406539_409602_F

Intron Information:

Intron Rank:
150659
Intron Class:
major
Intron Phase:
Intron Coordinates:
406539 - 409602
Intron Length:
3064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTACCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTGCTTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.3
0.61
0.9
69.8
35.7
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
63.1
0.49
1.7
78.9
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030948
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025686
405960 - 409750
3791