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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_408020_410558_R

Intron Information:

Intron Rank:
144628
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
408020 - 410558
Intron Length:
2539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ACAAATGGAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
CTTTCTGCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
48.6
-0
1.1
39.3
42.6
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
51.8
0.05
2.2
71.01
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025170
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023259
407922 - 411964
4043