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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_40821795_40822821_F

Intron Information:

Intron Rank:
123611
Intron Class:
major
Intron Phase:
Intron Coordinates:
40821795 - 40822821
Intron Length:
1027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTTCTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
72
0.5
1
75.7
33.2
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
68.2
0.55
1.5
76.09
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033891
40821066 - 40828050
6985