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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_40862820_40865440_F

Intron Information:

Intron Rank:
137067
Intron Class:
major
Intron Phase:
Intron Coordinates:
40862820 - 40865440
Intron Length:
2621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTGGCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTTATTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
61.6
0.26
1
58.4
42
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
50.5
0.09
2
73.71
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023811
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024298
40861925 - 40865636
3712