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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41004525_41015663_R

Intron Information:

Intron Rank:
130645
Intron Class:
major
Intron Phase:
Intron Coordinates:
41004525 - 41015663
Intron Length:
11139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTC
5'SS Class:
major
3'SS Sequence:
CTCTCTCACGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
ATTTGAAAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.8
32.7
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
69.6
0.44
0.8
65.8
29.1
Minor 5ss
53.3
0.11
2.3
70.3
40.3
Minor BPS
44.3
-0.3
2.4
72.6
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017547
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038706
41004376 - 41015787
11412