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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41050090_41059597_R

Intron Information:

Intron Rank:
148863
Intron Class:
major
Intron Phase:
Intron Coordinates:
41050090 - 41059597
Intron Length:
9508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAAATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.5
0.69
0.9
75.7
37.3
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027554
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030356
41049236 - 41060220
10985