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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41059763_41060204_R

Intron Information:

Intron Rank:
148864
Intron Class:
major
Intron Phase:
Intron Coordinates:
41059763 - 41060204
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAACC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTGCATGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
77.7
30.1
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
84.2
0.77
0.7
77.1
31.6
Minor 5ss
29.3
-2.4
2.8
35.3
40.9
Minor BPS
50.9
-0.1
2.1
67.34
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027554
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030356
41049236 - 41060220
10985