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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41098169_41098966_R

Intron Information:

Intron Rank:
103
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41098169 - 41098966
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AGTTATTTAAAT
Flanking Amino Acid:
NKDETEHTGQESYVWKMYQE
Intron Amino Acid Position:
4910

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
90.3
0.91
0.7
88.9
28.1
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
63
0.49
1.6
77.8
37.8

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122
ENSAPLT00000042777
41098073 - 41399991
301919