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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41101227_41103138_R

Intron Information:

Intron Rank:
100
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41101227 - 41103138
Intron Length:
1912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
ACTTAATCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATTATTTTAACT
Flanking Amino Acid:
VIVILLAIIQGLIIDAFGEL
Intron Amino Acid Position:
4837

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
65
0.34
0.9
55.7
39.4
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
75.7
0.89
1.1
86.62
32.6

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042777
41098073 - 41399991
301919
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122