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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41103296_41105420_R

Intron Information:

Intron Rank:
99
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41103296 - 41105420
Intron Length:
2125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTTTGTATCT
Flanking Amino Acid:
PDMKCDDMLTCYMFHMYVGV
Intron Amino Acid Position:
4785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.9
39.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
42.4
-0.8
3.1
65
39.9
Minor BPS
54.7
0.23
2.2
82.72
39.3

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042777
41098073 - 41399991
301919
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122