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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41105556_41106164_R

Intron Information:

Intron Rank:
98
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41105556 - 41106164
Intron Length:
609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAACT
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
AAATGTATAATT
Flanking Amino Acid:
LSSVTHNGKQLVLTVGLLAV
Intron Amino Acid Position:
4740

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.2
70.8
39.3
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
89.2
0.88
0.7
81.2
36.5
Minor 5ss
47.7
-0.2
2.6
67.9
42.7
Minor BPS
47.8
-0
1.9
65.29
39.3

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042777
41098073 - 41399991
301919
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122