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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41106312_41107675_R

Intron Information:

Intron Rank:
97
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41106312 - 41107675
Intron Length:
1364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTTGTAATG
Flanking Amino Acid:
WKLGVVFTDNSFLYLAWYMT
Intron Amino Acid Position:
4691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.7
41.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.6
0.82
0.7
85.5
29.2
Minor 5ss
40.3
-1.1
3.1
54.9
42.3
Minor BPS
53.1
-0
2
63.33
39.5

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122
ENSAPLT00000042777
41098073 - 41399991
301919