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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41107737_41109061_R

Intron Information:

Intron Rank:
96
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41107737 - 41109061
Intron Length:
1325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGCATT
5'SS Class:
major
3'SS Sequence:
TTTACTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATTCTTATAT
Flanking Amino Acid:
KPKKDSSLSAVLNSVDVKYQ
Intron Amino Acid Position:
4670

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
74.7
41.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89.2
0.88
0.7
83.8
31
Minor 5ss
47.3
-0.3
2.9
67.6
43.1
Minor BPS
64.6
0.54
1.7
81.89
39.3

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122
ENSAPLT00000042777
41098073 - 41399991
301919