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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41109196_41112242_R

Intron Information:

Intron Rank:
95
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41109196 - 41112242
Intron Length:
3047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTAAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TCCTCCTAAATT
Flanking Amino Acid:
NYWDKFVKRKVMDKYGEFYG
Intron Amino Acid Position:
4626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
66
0.36
0.9
63.6
36.1
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
67.5
0.63
1.7
79.08
43.9

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122
ENSAPLT00000042777
41098073 - 41399991
301919