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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41113031_41113524_R

Intron Information:

Intron Rank:
93
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41113031 - 41113524
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCAATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAATT
Flanking Amino Acid:
FCIIGYYCLKVPLVIFKREK
Intron Amino Acid Position:
4568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.7
27.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
84.5
0.78
0.8
78.8
33.2
Minor 5ss
34.5
-1.8
3
40.8
39.4
Minor BPS
71.4
0.75
1.4
87.38
32.1

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042777
41098073 - 41399991
301919
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122