About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41114691_41118199_R

Intron Information:

Intron Rank:
85
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41114691 - 41118199
Intron Length:
3509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTATGTATA
5'SS Class:
major
3'SS Sequence:
TGATAATTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTAATAATT
Flanking Amino Acid:
EETKSEPEKAEQGIFIFYFC
Intron Amino Acid Position:
4344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
73.4
37.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
62.5
0.28
1
60.6
44.5
Minor 5ss
46.7
-0.3
2.5
56
42.5
Minor BPS
62.1
0.46
1.8
85.83
33.8

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039234
41098073 - 41403194
305122