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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41116174_41118619_R

Intron Information:

Intron Rank:
88
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
41116174 - 41118619
Intron Length:
2446

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAT|GCTAACTAT
5'SS Class:
weak_major
3'SS Sequence:
TTTGTATCCTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTAACTTGACTT
Flanking Amino Acid:
MLMLYVYLFHIGEDGEKEEK
Intron Amino Acid Position:
4395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.4
0.01
1.5
53.3
40.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
68.8
0.42
1.1
72.7
36.9
Minor 5ss
33.3
-1.9
4.1
52.3
44.9
Minor BPS
49.8
0.06
1.7
70.3
40.9

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042777
41098073 - 41399991
301919