Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41125221_41126648_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41125221 - 41126648

Intron Length:

1428

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TACCTGTTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

GATTACATAATC

Flanking Amino Acid:

STVDYLLRVQESISDFYWYY

Intron Amino Acid Position:

3855

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

76.3

30.6

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

75.4

0.57

0.9

Minor 5ss

32.7

-2

3.1

39.4

46.5

Minor BPS

55.2

0.14

1.8

66.9

Associated Gene:

Gene:

RYR2

Ensembl Gene ID:

ENSAPLG00000011026

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042777

41098073 - 41399991

301919

ENSAPLT00000039234

41098073 - 41403194

305122

ENSAPLT00000011580

41098073 - 41403194

305122