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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41159401_41162867_R

Intron Information:

Intron Rank:
71
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41159401 - 41162867
Intron Length:
3467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATGTAACA
Flanking Amino Acid:
IANVLFHLEQVEHPQRSKKA
Intron Amino Acid Position:
3515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
76.8
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.7
0.62
1
73.6
40.4
Minor 5ss
28.2
-2.5
3.1
38.3
46.6
Minor BPS
60.4
0.32
2.2
80.03
36.1

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039234
41098073 - 41403194
305122